CORRELATION BETWEEN MUTATIONAL PROFILES IN FLUOROQUINOLONE RESISTANCE GENES (gyrA AND grlA) AND PHENOTYPIC ANTIBIOTIC SUSCEPTIBILITY IN CLINICAL ISOLATES OF METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS (MRSA)

Riyam Hasan Tuama, Lujain Ali Ghannawi, Jihad Anad Khalaf, Safaa Ehssan Atta, Omar Yasir Shakir, Mohammed Amer Thamer, Hanan Ibrahim Abdulwahid


DOI: http://dx.doi.org/10.30970/sbi.2002.881

Abstract


Background. Methicillin-resistant Staphylococcus aureus (MRSA) is recognized as a highly significant multidrug-resistant pathogen that can lead to severe fetal infections in both humans and animals. Fluoroquinolones (FQs) are considered among the antibiotics of choice used to manage MRSA infections. This study addresses rising fluoroquinolone resistance that limits treatment options. Resistance mechanisms typically involve mutations in the gyrA and grlA genes, which encode the drug’s targets. Objective: the aim of this research is to identify the genetic basis for resistance in clinical MRSA isolates. Specifically, the research focused on investigating the distribution of mutations in the gyrA and grlA genes responsible for fluoroquinolone resistance in MRSA isolates obtained from different clinical sources and assessing the correlation of these mutations with phenotypic antibiotic resistance.
Materials and Methods. Fifty MRSA isolates collected from various clinical specimens (burn, wound, nose, throat, urine, skin, ear, and operating room samples) were used in the study. Bacteriological methods and PCR detection of the nuc gene confirmed the identification of the isolates. Then, all of the isolates were tested against seven different antibiotics (methicillin, ciprofloxacin, levofloxacin, norfloxacin, ofloxacin, lomefloxacin, and nalidixic acid) using the disk diffusion method and Minimum Inhibitory Concentration (MIC) tests. Twelve isolates exhibiting antibiotic resistance were selected for direct sequence analysis of the gyrA, grlA, and mecA gene regions. The relationship between mutations and resistance was analyzed statistically.
Results. All isolates (100 %) carried the mecA gene, and no mutations were detected in this gene. The prevalence of fluoroquinolone resistance was 24 % (12 isolates). Sequence analysis revealed mutations at eight different positions in the gyrA gene (two missense, one deletion, and five silent) and seven different positions in the grlA gene (three missense, one silent, and three insertions). Statistical analysis revealed a significant positive correlation between mutant isolates in the gyrA and grlA genes and fluoroquinolone resistance (p < 0.0001). A significant correlation was also found between nalidixic acid resistance and the presence of mutations (p < 0.009).
Conclusion. The findings of this study indicate that a major mechanism of fluoroquinolone resistance in clinical MRSA isolates is the accumulation of mutations in the gyrA and grlA genes, which encode target enzymes, and that these mutations are strongly associated with high-level phenotypic resistance. It has been confirmed that methicillin resistance Are rely to the presence of the mecA gene and does not require a mutation in the gene itself. These results provide deeper insight into the underlying mechanisms of antimicrobial resistance.

Keywords


MRSA, fluoroquinolone resistance, mutation analysis, sequence analysis, antibiotic resistance

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References


Abebe, A. A., & Birhanu, A. G. (2023). Methicillin resistant Staphylococcus aureus: molecular mechanisms underlying drug resistance development and novel strategies to combat. Infection and Drug Resistance, 16, 7641-7662. doi:10.2147/idr.s428103
CrossrefPubMedPMCGoogle Scholar

Ahmed, S. K., Hussein, S., Qurbani, K., Ibrahim, R. H., Fareeq, A., Mahmood, K. A., & Mohamed, M. G. (2024). Antimicrobial resistance: impacts, challenges, and future prospects. Journal of Medicine, Surgery, and Public Health, 2, 100081. doi:10.1016/j.glmedi.2024.100081
CrossrefGoogle Scholar

Ali Alghamdi, B., Al-Johani, I., Al-Shamrani, J. M., Musamed Alshamrani, H., Al-Otaibi, B. G., Almazmomi, K., & Yusnoraini Yusof, N. (2023). Antimicrobial resistance in methicillin-resistant Staphylococcus aureus. Saudi Journal of Biological Sciences, 30(4), 103604. doi:10.1016/j.sjbs.2023.103604
CrossrefPubMedPMCGoogle Scholar

Atta, S. E., & Salman, E. D. (2020). Molecular study of fluoroquinolones resistance Staphylococcus aureus isolated from different clinical sources. International Journal of Pharmaceutical Research, 12(3), 814-820. doi:10.31838/ijpr/2020.12.03.118
CrossrefGoogle Scholar

Baker, S., Thomson, N., Weill, F.-X., & Holt, K. E. (2018). Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens. Science, 360(6390), 733-738. doi:10.1126/science.aar3777
CrossrefPubMedPMCGoogle Scholar

Banerjee, R., Teng, C. B., Cunningham, S. A., Ihde, S. M., Steckelberg, J. M., Moriarty, J. P., Shah, N. D., Mandrekar, J. N., & Patel, R. (2015). Randomized trial of rapid multiplex polymerase chain reaction-based blood culture identification and susceptibility testing. Clinical Infectious Diseases, 61(7), 1071-1080. doi:10.1093/cid/civ447
CrossrefPubMedPMCGoogle Scholar

Collins, J. A., & Osheroff, N. (2024). Gyrase and topoisomerase IV: recycling old targets for new antibacterials to combat fluoroquinolone resistance. ACS Infectious Diseases, 10(4), 1097-1115. doi:10.1021/acsinfecdis.4c00128
CrossrefPubMedPMCGoogle Scholar

Dakheel, K. H., Rahim, R. A., Al-Obaidi, J. R., Razali, N., Neela, V. K., Hun, T. G., & Yusoff, K. (2025). Proteomic analysis reveals phage-driven metabolic shifts and biofilm disruption in methicillin-resistant Staphylococcus aureus (MRSA). World Journal of Microbiology and Biotechnology, 41(7), 230. doi:10.1007/s11274-025-04397-5
CrossrefPubMedPMCGoogle Scholar

de Morais Oliveira-Tintino, C. D., Muniz, D. F., dos Santos Barbosa, C. R., Silva Pereira, R. L., Begnini, I. M., Rebelo, R. A., ... & da Silva, T. G. (2023). NorA, Tet(K), MepA, and MsrA efflux pumps in Staphylococcus aureus, their Inhibitors and 1,8-naphthyridine sulfonamides. Current Pharmaceutical Design, 29(5), 323-355. doi:10.2174/1381612829666221212101501
CrossrefPubMedGoogle Scholar

Diekema, D. J., Hsueh, P.-R., Mendes, R. E., Pfaller, M. A., Rolston, K. V., Sader, H. S., & Jones, R. N. (2019). The microbiology of bloodstream lnfection: 20-year trends from the SENTRY antimicrobial surveillance program. Antimicrobial Agents and Chemotherapy, 63(7). doi:10.1128/aac.00355-19
CrossrefPubMedPMCGoogle Scholar

Ebrahimi, E., Hadi, Z., Farsioo, S., Hasani, B., Badmasti, F., Beig, M., & Sholeh, M. (2025). Global genomic and antimicrobial resistance profiling of Neisseria gonorrhoeae: insights from whole genome sequencing and minimum inhibitory concentration analysis. PLOS Neglected Tropical Diseases, 19(10), e0013505. doi:10.1371/journal.pntd.0013505
CrossrefPubMedPMCGoogle Scholar

Fu, Y., Zhang, W., Wang, H., Zhao, S., Chen, Y., Meng, F., Zhang, Y., Xu, H., Chen, X., & Zhang, F. (2013). Specific patterns of gyr A mutations determine the resistance difference to ciprofloxacin and levofloxacin in Klebsiella pneumoniae and Escherichia coli. BMC Infectious Diseases, 13(1). 8. doi:10.1186/1471-2334-13-8
CrossrefPubMedPMCGoogle Scholar

Hetta, H. F., Ramadan, Y. N., & Al-Kadmy, I. M. S. (2025). Editorial for special issue "antibiotic combination therapy: a strategy to overcome bacterial resistance". Biomedicines, 13(1), 129. doi:10.3390/biomedicines13010129
CrossrefPubMedPMCGoogle Scholar

Huynh, T. Q., Tran, V. N., Thai, V. C., Nguyen, H. A., Nguyen, N. T. G., Surian, N. U., Chen, S., & Nguyen, T. T. H. (2023a). Analyzing genomic alterations involved in fluoroquinolone-resistant development in Staphylococcus aureus. bioRxiv, 2023-02. doi:10.1101/2023.02.26.530158
CrossrefGoogle Scholar

Huynh, T. Q., Tran, V. N., Thai, V. C., Nguyen, H. A., Nguyen, N. T. G., Tran, M. K., ... & Nguyen, T. T. H. (2023b). Genomic alterations involved in fluoroquinolone resistance development in Staphylococcus aureus. PLoS One, 18(7), e0287973. doi:10.1371/journal.pone.0287973
CrossrefPubMedPMCGoogle Scholar

Kadham, Z. A. A.-K. (2022). Detection of gyrA and parC genes in clinical Acinetobacter baumannii isolates. Al-Mustansiriyah Journal of Science, 33(4), 57-62. doi:10.23851/mjs.v33i4.1188
CrossrefGoogle Scholar

Kaul, A., Souque, C., Holland, M., & Baym, M. (2025). Genomic resistance in historical clinical isolates increased in frequency and mobility after the age of antibiotics. Microbial Genomics, 11(9), 001474. doi:10.1099/mgen.0.001474
CrossrefPubMedPMCGoogle Scholar

Kim, J. I., Maguire, F., Tsang, K. K., Gouliouris, T., Peacock, S. J., McAllister, T. A., McArthur, A. G., & Beiko, R. G. (2022). Machine learning for antimicrobial resistance prediction: current practice, limitations, and clinical perspective. Clinical Microbiology Reviews, 35(3), e0017921. doi:10.1128/cmr.00179-21
CrossrefPubMedPMCGoogle Scholar

Kumar, S., Anwer, R., Yadav, M., Sehrawat, N., Singh, M., & Kumar, V. (2021). Molecular typing and global epidemiology of Staphylococcus aureus. Current Pharmacology Reports, 7(5), 179-186. doi:10.1007/s40495-021-00264-7
CrossrefGoogle Scholar

Kumar, S., Mahato, R. P., Ch, S., & Kumbham, S. (2025). Current strategies against multidrug-resistant Staphylococcus aureus and advances toward future therapy. The Microbe, 6, 100281. doi:10.1016/j.microb.2025.100281
CrossrefGoogle Scholar

Li, J., Wei, Y., Wang, J., Li, Y., Shao, G., Feng, Z., & Xiong, Q. (2022). Characterization of mutations in DNA gyrase and topoisomerase IV in field strains and in vitro selected quinolone-resistant Mycoplasma hyorhinis mutants. Antibiotics, 11(4), 494. doi:10.3390/antibiotics11040494
CrossrefPubMedPMCGoogle Scholar

Li, J., Cheng, F., Wei, X., Bai, Y., Wang, Q., Li, B., Zhou, Y., Zhai, B., Zhou, X., Wang, W., & Zhang, J. (2025). Methicillin-resistant Staphylococcus aureus (MRSA): resistance, prevalence, and coping strategies. Antibiotics, 14(8), 771. doi:10.3390/antibiotics14080771
CrossrefPubMedPMCGoogle Scholar

Mahey, N., Tambat, R., Chandal, N., Verma, D. K., Thakur, K. G., & Nandanwar, H. (2021). Repurposing approved drugs as fluoroquinolone potentiators to overcome efflux pump resistance in Staphylococcus aureus. Microbiology Spectrum, 9(3), e00951-21. doi:10.1128/spectrum.00951-21
CrossrefPubMedPMCGoogle Scholar

Mlynarczyk-Bonikowska, B., Kowalewski, C., Krolak-Ulinska, A., & Marusza, W. (2022). Molecular mechanisms of drug resistance in Staphylococcus aureus. International Journal of Molecular Sciences, 23(15), 8088. doi:10.3390/ijms23158088
CrossrefPubMedPMCGoogle Scholar

Ostrer, L., Khodursky, R. F., Johnson, J. R., Hiasa, H., & Khodursky, A. (2019). Analysis of mutational patterns in quinolone resistance-determining regions of GyrA and ParC of clinical isolates. International Journal of Antimicrobial Agents, 53(3), 318-324. doi:10.1016/j.ijantimicag.2018.12.004
CrossrefPubMedGoogle Scholar

Qader, T. A., Ali, M. R., & Alsakini, A. H. (2025). Genomic investigation and biofilm characterization of methicillin-resistant Staphylococcus aureus in Baghdad province. Iraqi Journal of Medical Sciences, 23(1), 75-82. doi:10.22578/ijms.23.1.9
CrossrefGoogle Scholar

Roer, L., Yin, N., Denis, O., Vendrik, K. E., Zwittink, R. D., Notermans, D. W., ... & Petersen, A. (2025). Spread of the FAR-MRSA clone, a fusidic acid- and meticillin-resistant Staphylococcus aureus ST121, Europe, 2014 to 2024. Eurosurveillance, 30(28), 2500452. doi:10.2807/1560-7917.es.2025.30.28.2500452
CrossrefGoogle Scholar

Schuetz, A. N., Ferrell, A., Hindler, J. A., Humphries, R., & Bobenchik, A. M. (2025). Overview of changes in the Clinical and Laboratory Standards Institute Performance Standards for Antimicrobial Susceptibility Testing: M100 32nd and 33rd editions. Journal of Clinical Microbiology, 63(9), e0162323. doi:10.1128/jcm.01623-23
CrossrefPubMedPMCGoogle Scholar

Tang, K., & Zhao, H. (2023). Quinolone antibiotics: resistance and therapy. Infection and Drug Resistance, 16, 811-820. doi:10.2147/idr.s401663
CrossrefPubMedPMCGoogle Scholar

Turner, N. A., Sharma-Kuinkel, B. K., Maskarinec, S. A., Eichenberger, E. M., Shah, P. P., Carugati, M., Holland, T. L., & Fowler, V. G. (2019). Methicillin-resistant Staphylococcus aureus: an overview of basic and clinical research. Nature Reviews Microbiology, 17(4), 203-218. doi:10.1038/s41579-018-0147-4
CrossrefPubMedPMCGoogle Scholar

Windels, E. M., Michiels, J. E., Fauvart, M., Wenseleers, T., Van den Bergh, B., & Michiels, J. (2019). Bacterial persistence promotes the evolution of antibiotic resistance by increasing survival and mutation rates. The ISME Journal, 13(5), 1239-1251. doi:10.1038/s41396-019-0344-9
CrossrefPubMedPMCGoogle Scholar

World Health Organization (WHO). (2025). Global research agenda for antimicrobial resistance in human health. World Health Organization. https://www.who.int/publications/i/item/9789240102309

Yuan, H., Xu, J., Wang, Y., Li, Y., Hao, Y., Long, J., Liu, F., Zhu, J., & Yang, H. (2025). The global antimicrobial resistance trends of Staphylococcus aureus and influencing factors. Microbiology Research, 16(6), 118. doi:10.3390/microbiolres16060118
CrossrefGoogle Scholar


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